nf-core/snpdists @ 0.0.0-6c4ed3a
Summary
Pairwise SNP distance matrix from a FASTA sequence alignment
Get started
Add the following snippet to your workflow script to include this module.
include { SNPDISTS } from 'nf-core/snpdists'
License
MIT License
Process
Name
|
SNPDISTS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
alignment
file
|
The input FASTA sequence alignment file *.{fasta,fasta.gz}
|
Output
2 channels
#1
tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.tsv
file
|
The output TSV file containing SNP distance matrix *.tsv
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| snpdists | Convert a FASTA alignment to SNP distance matrix | https://github.com/tseemann/snp-dists |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:46:38 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fsnpdists/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/snpdists/blobs/sha256:f4504ef994f4efce0c2e0130f69d963b2f831369d0878c71736052e6bd9d852c |
| Size | 2.0 KB |
| Checksum | sha256:f4504ef994f4efce0c2e0130f69d963b2f831369d0878c71736052e6bd9d852c |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:46:38 (UTC) | 3 | 2.0 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:32:17 (UTC) | 3 | 2.0 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:39:23 (UTC) | 3 | 2.0 KB |