nf-core/snpsift/annotate @ 0.0.0-6c4ed3a
Summary
Annotate a VCF file with another VCF file
Get started
Add the following snippet to your workflow script to include this module.
include { SNPSIFT_ANNOTATE } from 'nf-core/snpsift/annotate'
License
MIT License
Process
Name
|
SNPSIFT_ANNOTATE |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information regarding vcf file provided e.g. [ id:'test', single_end:false ] |
|---|---|
vcf
file
|
VCF file *.{vcf, vcf.gz}
|
vcf_tbi
file
|
Tabix file for compressed vcf provided *.{tbi}
|
#2
tuple
meta2
map
|
Groovy map containing sample information regarding database provided |
|---|---|
database
file
|
Database for use to annotate *.{vcf/vcf.gz}
|
dbs_tbi
file
|
Tabix file for compressed database provided *.{tbi}
|
Output
2 channels
#1
vcf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.vcf
file
|
Variant Calling File annotated *.{vcf}
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| snpsift | SnpSift is a toolbox that allows you to filter and manipulate annotated files | https://pcingola.github.io/SnpEff/ss_introduction/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:46:45 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fsnpsift%2Fannotate/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/snpsift/annotate/blobs/sha256:bfb602a225c6c1f3de1b92e8b728baa9944205c858e56e5131674013a831ccfa |
| Size | 2.6 KB |
| Checksum | sha256:bfb602a225c6c1f3de1b92e8b728baa9944205c858e56e5131674013a831ccfa |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:46:45 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:39:33 (UTC) | 2 | 2.6 KB |