nf-core/sourmash/index @ 0.0.0-f7a55a7
Summary
Create a database of sourmash signatures (a group of FracMinHash sketches) to be used as references.
Get started
Add the following snippet to your workflow script to include this module.
include { SOURMASH_INDEX } from 'nf-core/sourmash/index'
License
MIT License
Process
Name
|
SOURMASH_INDEX |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
signatures
file
|
Files containing signature (hash sketches) of reference genomes *.{sig}
|
ksize
integer
|
ksize value |
|---|
Output
2 channels
#1
signature_index
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.sbt.zip
file
|
Database of signatures *.{sbt.zip}
|
#2
versions_sourmash
tuple
${task.process}
string
|
The name of the process |
|---|---|
sourmash
string
|
The name of the tool |
sourmash --version 2>&1 | sed 's/^sourmash //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| sourmash | Compute and compare FracMinHash signatures for DNA data sets. | https://sourmash.readthedocs.io/ |
| Version | 0.0.0-f7a55a7 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 09 Apr 2026 15:00:54 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fsourmash%2Findex/0.0.0-f7a55a7/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/sourmash/index/blobs/sha256:29366185d4d31e62e640b777f241919f4d4d55e9219dd0ba2a01544f866e06e8 |
| Size | 2.3 KB |
| Checksum | sha256:29366185d4d31e62e640b777f241919f4d4d55e9219dd0ba2a01544f866e06e8 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:46:59 (UTC) | 5 | 2.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:32:27 (UTC) | 4 | 2.4 KB | |
| 0.0.0-e18a462 | 20 Apr 2026 15:00:33 (UTC) | 3 | 2.4 KB | |
| 0.0.0-c0c2de1 | 19 Apr 2026 15:00:18 (UTC) | 3 | 2.4 KB | |
| 0.0.0-f7a55a7 | 09 Apr 2026 15:00:54 (UTC) | 3 | 2.3 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:39:54 (UTC) | 2 | 2.3 KB |