Nextflow Modules
Showing module(s) with keyword "sourmash"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/fmhfunprofiler | Process | metagenomics functional profiling FracMinHash sourmash kegg | Functionally profile metagenomic samples using FracMinHash sketches against KEGG database references. |
| nf-core/sourmash/compare | Process | compare FracMinHash sketch containment sourmash metagenomics genomics kmer | Compare many FracMinHash signatures generated by sourmash sketch. |
| nf-core/sourmash/gather | Process | FracMinHash sketch signature kmer containment sourmash genomics metagenomics taxonomic classification taxonomic profiling | Search a metagenome sourmash signature against one or many reference databases and return the minimum set of genomes that contain the k-mers in the metagenome. |
| nf-core/sourmash/index | Process | signatures sourmash genomics metagenomics mapping kmer | Create a database of sourmash signatures (a group of FracMinHash sketches) to be used as references. |
| nf-core/sourmash/pairwise | Process | compare genomics pairwise metagenomics sourmash branchwater kmer containment | Fast, multithreaded comparison of many FracMinHash signatures generated by sourmash sketch. |
| nf-core/sourmash/sketch | Process | hash sketch sourmash genomics metagenomics taxonomic classification taxonomic profiling kmer | Create a signature (a group of FracMinHash sketches) of a sequence using sourmash |
| nf-core/sourmash/taxannotate | Process | fracminhash sketch signature kmer containment sourmash genomics metagenomics taxonomic classification taxonomic profiling | Annotate list of metagenome members (based on sourmash signature matches) with taxonomic information. |