nf-core/sourmash/sketch @ 0.0.0-3fc6d40
Summary
Create a signature (a group of FracMinHash sketches) of a sequence using sourmash
Get started
Add the following snippet to your workflow script to include this module.
include { SOURMASH_SKETCH } from 'nf-core/sourmash/sketch'
License
MIT License
Process
Name
|
SOURMASH_SKETCH |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
library
file
|
One or more FASTA or FASTQ file(s) containing (genomic, transcriptomic, or proteomic) sequence data *.{fna,fa,fasta,fastq,fq,faa}.gz
|
Output
2 channels
#1
signatures
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.sig
file
|
FracMinHash signature of the given sequence *.{sig}
|
#2
versions_sourmash
tuple
${task.process}
string
|
The name of the process |
|---|---|
sourmash
string
|
The name of the tool |
sourmash --version 2>&1 | sed 's/^sourmash //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| sourmash | Compute and compare FracMinHash signatures for DNA and protein data sets. | https://sourmash.readthedocs.io/ |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:32:28 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fsourmash%2Fsketch/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/sourmash/sketch/blobs/sha256:753a410c837e03f6bfb8399ff82e073058f7c2519275ede516c8a27d624e1f3b |
| Size | 2.5 KB |
| Checksum | sha256:753a410c837e03f6bfb8399ff82e073058f7c2519275ede516c8a27d624e1f3b |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:47:01 (UTC) | 3 | 2.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:32:28 (UTC) | 3 | 2.5 KB | |
| 0.0.0-f7a55a7 | 09 Apr 2026 15:00:56 (UTC) | 3 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:39:56 (UTC) | 3 | 2.4 KB |