nf-core/stecfinder @ 0.0.0-0c7146d
Summary
Serotype STEC samples from paired-end reads or assemblies
Get started
Add the following snippet to your workflow script to include this module.
include { STECFINDER } from 'nf-core/stecfinder'
License
MIT License
Process
Name
|
STECFINDER |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
seqs
file
|
Illumina paired-end reads or an assembly *.{fastq.gz,fasta.gz,fna.gz}
|
Output
2 channels
#1
tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.tsv
file
|
A tab-delimited report of results *.tsv
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| stecfinder | Cluster informed Shigatoxin producing E. coli (STEC) serotyping tool from Illumina reads and assemblies | https://github.com/LanLab/STECFinder |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:40:50 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fstecfinder/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/stecfinder/blobs/sha256:22b4ecdd594aee62cb50f8f22ec784f9adee095c88d5d423f7f8ce8d7177f990 |
| Size | 2.4 KB |
| Checksum | sha256:22b4ecdd594aee62cb50f8f22ec784f9adee095c88d5d423f7f8ce8d7177f990 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:47:34 (UTC) | 3 | 2.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:32:47 (UTC) | 4 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:40:50 (UTC) | 4 | 2.4 KB |