nf-core/svtk/baftest @ 0.0.0-6c4ed3a
Summary
Performs tests on BAF files
Get started
Add the following snippet to your workflow script to include this module.
include { SVTK_BAFTEST } from 'nf-core/svtk/baftest'
License
MIT License
Process
Name
|
SVTK_BAFTEST |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bed
file
|
A BED file created with *.bed
|
baf
file
|
A BAF file created with *.baf.txt.gz
|
baf_index
file
|
The index of the BAF file *.baf.txt.gz.tbi
|
batch
file
|
A text file containing information about the sample(s) *.txt
|
Output
2 channels
#1
metrics
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.metrics
file
|
The results file from the BAF test *.metrics
|
#2
versions_svtk
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
svtk
string
|
The tool name |
0.0.20190615
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| svtk | Utilities for consolidating, filtering, resolving, and annotating structural variants. | https://github.com/broadinstitute/gatk-sv/tree/master/src/svtk |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:48:51 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fsvtk%2Fbaftest/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/svtk/baftest/blobs/sha256:53fc4961f4ca2c7043b01f9a6ea496ca177758177b4edfed49354a40b9b4e68b |
| Size | 2.9 KB |
| Checksum | sha256:53fc4961f4ca2c7043b01f9a6ea496ca177758177b4edfed49354a40b9b4e68b |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:48:51 (UTC) | 3 | 2.9 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:33:50 (UTC) | 3 | 3.0 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:41:34 (UTC) | 4 | 2.9 KB |