Nextflow Modules
Showing module(s) with keyword "svtk"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/svtk/baftest | Process | svtk svtk/baftest baftest baf bed structural variants | Performs tests on BAF files |
| nf-core/svtk/countsvtypes | Process | svtk countsvtypes vcf structural variants | Count the instances of each SVTYPE observed in each sample in a VCF. |
| nf-core/svtk/rdtest2vcf | Process | svtk rdtest2vcf bed rdtest vcf | Convert an RdTest-formatted bed to the standard VCF format. |
| nf-core/svtk/standardize | Process | svtk structural variants SV vcf standardization | Convert SV calls to a standardized format. |
| nf-core/svtk/vcf2bed | Process | vcf bed vcf2bed svtk structural variants | Converts VCFs containing structural variants to BED format |