nf-core/svtk/vcf2bed @ 0.0.0-6c4ed3a
Summary
Converts VCFs containing structural variants to BED format
Get started
Add the following snippet to your workflow script to include this module.
include { SVTK_VCF2BED } from 'nf-core/svtk/vcf2bed'
License
MIT License
Process
Name
|
SVTK_VCF2BED |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
vcf
file
|
A VCF file created with a structural variant caller *.vcf.gz
|
tbi
file
|
The index for the VCF file *.vcf.gz.tbi
|
Output
2 channels
#1
bed
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bed
file
|
The created BED file *.bed
|
#2
versions_svtk
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
svtk
string
|
The tool name |
0.0.20190615
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| svtk | Utilities for consolidating, filtering, resolving, and annotating structural variants. | https://github.com/broadinstitute/gatk-sv/tree/master/src/svtk |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:48:55 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fsvtk%2Fvcf2bed/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/svtk/vcf2bed/blobs/sha256:bfcede025140430e4751efeb391e28f1d3700ecccf2acefd6a5a69740673e7da |
| Size | 2.2 KB |
| Checksum | sha256:bfcede025140430e4751efeb391e28f1d3700ecccf2acefd6a5a69740673e7da |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:48:55 (UTC) | 3 | 2.2 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:33:54 (UTC) | 2 | 2.3 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:41:41 (UTC) | 5 | 2.2 KB |