nf-core/svtools/vcftobedpe @ 0.0.0-6c4ed3a
Summary
Convert a VCF file to a BEDPE file.
Get started
Add the following snippet to your workflow script to include this module.
include { SVTOOLS_VCFTOBEDPE } from 'nf-core/svtools/vcftobedpe'
License
MIT License
Process
Name
|
SVTOOLS_VCFTOBEDPE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
vcf
file
|
Input VCF file containing structural variants *.{vcf,vcf.gz}
|
Output
2 channels
#1
bedpe
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.bedpe
file
|
The converted BEDPE file *.bedpe
|
#2
versions_svtools
tuple
${task.process}
string
|
The name of the process |
|---|---|
svtools
string
|
The name of the tool |
svtools --version |& sed 's/svtools //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| svtools | Tools for processing and analyzing structural variants | n/a |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:48:56 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fsvtools%2Fvcftobedpe/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/svtools/vcftobedpe/blobs/sha256:93a98893eab74d53c5d0439c9769871e63a1987aa7145c76553dd4a77c2c4156 |
| Size | 2.1 KB |
| Checksum | sha256:93a98893eab74d53c5d0439c9769871e63a1987aa7145c76553dd4a77c2c4156 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:48:56 (UTC) | 4 | 2.1 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:33:55 (UTC) | 3 | 2.1 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:41:43 (UTC) | 3 | 2.1 KB |