nf-core/sylph/profile @ 0.0.0-0c7146d
Summary
Sylph profile command for taxonoming profiling
Get started
Add the following snippet to your workflow script to include this module.
include { SYLPH_PROFILE } from 'nf-core/sylph/profile'
License
MIT License
Process
Name
|
SYLPH_PROFILE |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
reads
file
|
List of input FastQ/FASTA files of size 1 and 2 for single-end and paired-end data, respectively. They are automatically sketched to .sylsp/.syldb |
database
file
|
Pre-sketched .syldb/.sylsp files. Raw single-end fastq/fasta are allowed and will be automatically sketched to .sylsp/.syldb. *.{syldb,sylsp,fasta,fastq}
|
|---|
Output
2 channels
#1
profile_out
tuple
meta
map
|
Groovy Map containing sample information |
|---|---|
*.tsv
file
|
Output file of species-level taxonomic profiling with abundances and ANIs. *tsv
|
#2
versions_sylph
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
sylph
string
|
The tool name |
sylph -V | awk "{print \$2}"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| sylph | Sylph quickly enables querying of genomes against even low-coverage shotgun metagenomes to find nearest neighbour ANI. | https://github.com/bluenote-1577/sylph |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:41:50 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fsylph%2Fprofile/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/sylph/profile/blobs/sha256:45518d27df40aa8b2089e24a4f0a9b5cec579cb5f8a09cd7010f3567e9b8cc8f |
| Size | 2.7 KB |
| Checksum | sha256:45518d27df40aa8b2089e24a4f0a9b5cec579cb5f8a09cd7010f3567e9b8cc8f |
| Downloads | 2 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:49:01 (UTC) | 3 | 2.7 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:34:00 (UTC) | 3 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:41:50 (UTC) | 2 | 2.7 KB |