nf-core/sylph/sketch @ 0.0.0-6c4ed3a
Summary
Sketching/indexing sequencing reads
Get started
Add the following snippet to your workflow script to include this module.
include { SYLPH_SKETCH } from 'nf-core/sylph/sketch'
License
MIT License
Process
Name
|
SYLPH_SKETCH |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
reads
file
|
Input fastq files *.{fq,fastq,fq.gz,fastq.gz}
|
reference
file
|
Reference genome file in FASTA format |
|---|
Output
2 channels
#1
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#2
sketch_fastq_genome
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test'] |
|---|---|
my_sketches/*.sylsp
map
|
Output sylph sketch files of input reads for profiling my_sketches/*.sylsp
|
database.syldb
map
|
Output sylph database files for profiling against database *.syldb
|
| Tool | Description | Homepage |
|---|---|---|
| sylph | Sylph quickly enables querying of genomes against even low-coverage shotgun metagenomes to find nearest neighbour ANI. | https://github.com/bluenote-1577/sylph |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:49:03 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fsylph%2Fsketch/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/sylph/sketch/blobs/sha256:86406ede15a35f1b93522dc567b4803cf8acc86c6bad22ae4e2414320054b19c |
| Size | 2.6 KB |
| Checksum | sha256:86406ede15a35f1b93522dc567b4803cf8acc86c6bad22ae4e2414320054b19c |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:49:03 (UTC) | 3 | 2.6 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:34:02 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:41:52 (UTC) | 4 | 2.5 KB |