nf-core/sylph/sketchsamples @ 0.0.0-6c4ed3a
Summary
Sketching/indexing sequencing reads
Get started
Add the following snippet to your workflow script to include this module.
include { SYLPH_SKETCHSAMPLES } from 'nf-core/sylph/sketchsamples'
License
MIT License
Process
Name
|
SYLPH_SKETCHSAMPLES |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
reads
file
|
Input fastq files *.{fq,fastq,fq.gz,fastq.gz}
|
Output
2 channels
#1
sylsp
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test'] |
|---|---|
my_sketches/*.sylsp
map
|
Output sylph sketch files for profiling my_sketches/*.sylsp
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| sylph | Sylph quickly enables querying of genomes against even low-coverage shotgun metagenomes to find nearest neighbour ANI. | https://github.com/bluenote-1577/sylph |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:49:05 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fsylph%2Fsketchsamples/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/sylph/sketchsamples/blobs/sha256:0c0bb555209992b20c649b179b41073d1eb01540674c8b71725598afbb65053d |
| Size | 2.4 KB |
| Checksum | sha256:0c0bb555209992b20c649b179b41073d1eb01540674c8b71725598afbb65053d |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:49:05 (UTC) | 3 | 2.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:34:04 (UTC) | 3 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:42:36 (UTC) | 3 | 2.4 KB |