nf-core/sylphtax/taxprof @ 0.0.0-6c4ed3a
Summary
Incorporates taxonomy into sylph metagenomic classifier
Get started
Add the following snippet to your workflow script to include this module.
include { SYLPHTAX_TAXPROF } from 'nf-core/sylphtax/taxprof'
License
MIT License
Name
|
SYLPHTAX_TAXPROF |
|---|
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
sylph_results
file
|
Output results from sylph classifier. The database file(s) used to create this file with sylph must be the same as those of the taxonomy input channel of this module. *.{tsv}
|
taxonomy
file
|
A list of sylph-tax identifiers (e.g. GTDB_r220 or IMGVR_4.1). Multiple taxonomy metadata files can be input. Custom taxonomy files are also possible. |
|---|
taxprof_output
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.sylphmpa
file
|
A tab-separated file containing a metagenomic taxonomic profile generated by sylph-tax, including columns for lineage and taxid *{.sylphmpa}
|
versions_sylphtax
tuple
${task.process}
string
|
The name of the process |
|---|---|
sylph-tax
string
|
The name of the tool |
sylph-tax --version 2>&1 | tail -1
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| sylphtax | Integrating taxonomic information into the sylph metagenome profiler. | https://github.com/bluenote-1577/sylph-tax?tab=readme-ov-file |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:49:08 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fsylphtax%2Ftaxprof/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/sylphtax/taxprof/blobs/sha256:9d78177a606091194d0bd4559b9eb4a46063812f4ca488ba64f1dce1f74554ab |
| Size | 2.6 KB |
| Checksum | sha256:9d78177a606091194d0bd4559b9eb4a46063812f4ca488ba64f1dce1f74554ab |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:49:08 (UTC) | 4 | 2.6 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:34:06 (UTC) | 3 | 2.6 KB | |
| 0.0.0-f7a55a7 | 09 Apr 2026 15:01:04 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:42:40 (UTC) | 3 | 2.5 KB |