nf-core/taxonkit/list @ 0.0.0-3fc6d40
Summary
Generate taxonomic subtrees based on taxonids
Get started
Add the following snippet to your workflow script to include this module.
include { TAXONKIT_LIST } from 'nf-core/taxonkit/list'
License
MIT License
Process
Name
|
TAXONKIT_LIST |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
taxid
string
|
Taxon id to look up (provide either this or taxidfile, not both) |
taxidfile
file
|
File with taxon ids to look up, each on their own line (provide either this or name, not both) |
taxdb
file
|
Taxonomy database unpacked from ftp://ftp.ncbi.nih.gov/pub/taxonomy/taxdump.tar.gz |
|---|
Output
2 channels
#1
tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.tsv
file
|
TSV file with taxonomic subtrees *.tsv
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| taxonkit | A Cross-platform and Efficient NCBI Taxonomy Toolkit | https://bioinf.shenwei.me/taxonkit/ |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:34:12 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Ftaxonkit%2Flist/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/taxonkit/list/blobs/sha256:df283b16b7e47b03189d3690f4a609f1316f12ddf1dd051ebe9c857da8e2c8d2 |
| Size | 2.6 KB |
| Checksum | sha256:df283b16b7e47b03189d3690f4a609f1316f12ddf1dd051ebe9c857da8e2c8d2 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:49:21 (UTC) | 4 | 2.6 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:34:12 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:43:00 (UTC) | 3 | 2.6 KB |