nf-core/thermorawfileparser @ 0.0.0-0c7146d
Summary
Parses a Thermo RAW file containing mass spectra to an open file format
Get started
Add the following snippet to your workflow script to include this module.
include { THERMORAWFILEPARSER } from 'nf-core/thermorawfileparser'
License
MIT License
Process
Name
|
THERMORAWFILEPARSER |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
raw
file
|
Thermo RAW file *.{raw,RAW}
|
Output
2 channels
#1
spectra
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.{mzML,mzML.gz,mgf,mgf.gz,parquet,parquet.gz}
file
|
Mass spectra in open format *.{mzML,mzML.gz,mgf,mgf.gz,parquet,parquet.gz}
|
#2
versions_thermorawfileparser
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
thermorawfileparser
string
|
The name of the tool |
ThermoRawFileParser.sh --version
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| thermorawfileparser | Wrapper around the .net (C#) ThermoFisher ThermoRawFileReader library for running on Linux with mono | https://github.com/compomics/ThermoRawFileParser/blob/master/README.md |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:43:38 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fthermorawfileparser/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/thermorawfileparser/blobs/sha256:d3ea11dd1c23d11b7eaf70bdebcf84d79c5d6bfc2835272227325e9027078977 |
| Size | 2.8 KB |
| Checksum | sha256:d3ea11dd1c23d11b7eaf70bdebcf84d79c5d6bfc2835272227325e9027078977 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:49:46 (UTC) | 4 | 2.8 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:34:28 (UTC) | 3 | 2.8 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:43:38 (UTC) | 3 | 2.8 KB |