Nextflow Modules
Showing module(s) with keyword "mzml"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/comet | Process | spectrum identification search engine proteomics fasta mzml | Comet is an open source tandem mass spectrometry (MS/MS) sequence database search tool |
| nf-core/easypqp/convert | Process | proteomics spectral library dia pepxml idxml mzml | Convert peptide identifications (pepXML or idXML) and the matching spectra (mzML, mzXML or MGF) into EasyPQP PSM and peak pickle files for spectral library generation. |
| nf-core/openms/fileconverter | Process | file conversion mass spectrometry mzml mzxml openms proteomics | Converts between different mass spectrometry file formats (e.g. mzML, mzXML, mgf, mzData, dta, dta2d, featureXML, consensusXML, idXML). |
| nf-core/openms/peakpickerhires | Process | peak picking mzml openms proteomics | A tool for peak detection in high-resolution profile data (Orbitrap or FTICR) |
| nf-core/openmsthirdparty/cometadapter | Process | search engine fasta mzml openms proteomics | Annotates MS/MS spectra using Comet. |
| nf-core/quantmsutils/mzmlstatistics | Process | quantms-utils mzml statistics proteomics mass spectrometry | Generate statistics from mzML files using quantms-utils |
| nf-core/thermorawfileparser | Process | raw mzml mgf parquet parser proteomics | Parses a Thermo RAW file containing mass spectra to an open file format |