nf-core/trycycler/subsample @ 0.0.0-3fc6d40
Summary
Subsample a long-read sequencing fastq file for multiple assemblies
Get started
Add the following snippet to your workflow script to include this module.
include { TRYCYCLER_SUBSAMPLE } from 'nf-core/trycycler/subsample'
License
MIT License
Process
Name
|
TRYCYCLER_SUBSAMPLE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
reads
file
|
Long-read FASTQ file, optionally gzip compressed |
Output
2 channels
#1
subreads
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*/*.fastq.gz
file
|
Subsampled read sets *.{fastq.gz}
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| trycycler | Trycycler is a tool for generating consensus long-read assemblies for bacterial genomes | https://github.com/rrwick/Trycycler |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:34:57 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Ftrycycler%2Fsubsample/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/trycycler/subsample/blobs/sha256:6b8462583a9167abbde46b621362cf62ee0d2a904e2660708710313282652195 |
| Size | 3.0 KB |
| Checksum | sha256:6b8462583a9167abbde46b621362cf62ee0d2a904e2660708710313282652195 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:50:21 (UTC) | 3 | 3.0 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:34:57 (UTC) | 3 | 3.0 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:44:28 (UTC) | 3 | 3.0 KB |