nf-core/ucsc/bedclip @ 0.0.0-3fc6d40
Summary
Remove lines from bed file that refer to off-chromosome locations.
Get started
Add the following snippet to your workflow script to include this module.
include { UCSC_BEDCLIP } from 'nf-core/ucsc/bedclip'
License
MIT License
Process
Name
|
UCSC_BEDCLIP |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bedgraph
file
|
bedGraph file *.{bedgraph}
|
sizes
file
|
Chromosome sizes file |
|---|
Output
2 channels
#1
bedgraph
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bedGraph
file
|
bedGraph file *.{bedgraph}
|
#2
versions_ucsc
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
ucsc
string
|
The tool name |
482
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| ucsc | Remove lines from bed file that refer to off-chromosome locations. | http://hgdownload.cse.ucsc.edu/admin/exe/ |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:35:01 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fucsc%2Fbedclip/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/ucsc/bedclip/blobs/sha256:7ead206065177b0c8d2cdc5bb92ffb78232ca2e5ee82b75470b2e7d130a6e89c |
| Size | 2.3 KB |
| Checksum | sha256:7ead206065177b0c8d2cdc5bb92ffb78232ca2e5ee82b75470b2e7d130a6e89c |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:50:24 (UTC) | 3 | 2.3 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:35:01 (UTC) | 3 | 2.3 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:44:33 (UTC) | 3 | 2.3 KB |