nf-core/ucsc/liftover @ 0.0.0-0c7146d
Summary
convert between genome builds
Get started
Add the following snippet to your workflow script to include this module.
include { UCSC_LIFTOVER } from 'nf-core/ucsc/liftover'
License
MIT License
Process
Name
|
UCSC_LIFTOVER |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bed
file
|
Browser Extensible Data (BED) file *.{bed}
|
chain
file
|
Chain file *.{chain,chain.gz}
|
|---|
Output
3 channels
#1
lifted
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.lifted.bed
file
|
BED file containing successfully lifted variants *.{lifted.bed}
|
#2
unlifted
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.unlifted.bed
file
|
BED file containing variants that couldn't be lifted *.{unlifted.bed}
|
#3
versions_ucsc
tuple
${task.process}
string
|
The name of the process |
|---|---|
ucsc
string
|
The name of the tool |
482
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| ucsc | Move annotations from one assembly to another | http://hgdownload.cse.ucsc.edu/admin/exe/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:44:42 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fucsc%2Fliftover/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/ucsc/liftover/blobs/sha256:07da862f85f869bcf35f23e7ce694f99791081d9877b09475a3e77b7906756a5 |
| Size | 2.5 KB |
| Checksum | sha256:07da862f85f869bcf35f23e7ce694f99791081d9877b09475a3e77b7906756a5 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:50:30 (UTC) | 3 | 2.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:35:07 (UTC) | 3 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:44:42 (UTC) | 3 | 2.5 KB |