nf-core/variantbam @ 0.0.0-0c7146d
Summary
Filtering, downsampling and profiling alignments in BAM/CRAM formats
Get started
Add the following snippet to your workflow script to include this module.
include { VARIANTBAM } from 'nf-core/variantbam'
License
MIT License
Process
Name
|
VARIANTBAM |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
BAM/CRAM file *.{bam,cram}
|
Output
2 channels
#1
bam
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bam
file
|
Filtered or downsampled BAM file *.{bam}
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| variantbam | Filtering and profiling of next-generational sequencing data using region-specific rules | https://github.com/walaj/VariantBam |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:45:22 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fvariantbam/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/variantbam/blobs/sha256:382363e7623e62ccdc3c811849c4c2649a14cb1080974a4f44ea25af1ffb12eb |
| Size | 2.2 KB |
| Checksum | sha256:382363e7623e62ccdc3c811849c4c2649a14cb1080974a4f44ea25af1ffb12eb |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:51:42 (UTC) | 3 | 2.3 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:36:03 (UTC) | 4 | 2.3 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:45:22 (UTC) | 4 | 2.2 KB |