Nextflow Registry | nf-core/vcfexpress@0.0.0-0c7146d

nf-core/vcfexpress @ 0.0.0-0c7146d

Filter a VCF/BCF and optionally print by template expression. If no template is given the output will be VCF/BCF

vcf bcf filter lua expressions genomics

Latest version: 0.0.0-6c4ed3a

Total downloads: 7

Source: nf-core/modules

Authors: @sofiademmou

Maintainers: @sofiademmou

Filter a VCF/BCF and optionally print by template expression. If no template is given the output will be VCF/BCF

Add the following snippet to your workflow script to include this module.

include { VCFEXPRESS } from 'nf-core/vcfexpress'

MIT License

Process

`Name`	`VCFEXPRESS`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`vcf` file	VCF file `*.{vcf,vcf.gz,bcf,bcf.gz}`

`prelude` file	File(s) containing lua(u) code to run once before any variants are processed. `header` is available here to access or modify the header `*.lua`

Output 2 channels

#1 vcf tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.{vcf,vcf.gz,bcf,bcf.gz}` file	VCF file `*.{vcf,vcf.gz,bcf,bcf.gz}`

#2 versions_vcfexpress tuple

`${task.process}` string	The name of the process
`vcfexpress` string	The name of the tool
`vcfexpress --version \| sed 's/vcfexpress //'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
vcfexpress	expressions on VCFs	https://github.com/brentp/vcfexpress

Version	0.0.0-0c7146d
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	08 Apr 2026 19:46:18 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fvcfexpress/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/vcfexpress/blobs/sha256:9dcbb4c6881fcb6731948fddb073774e5bb048a12da6b9074c5fdb5076ca11be
Size	2.6 KB
Checksum	sha256:9dcbb4c6881fcb6731948fddb073774e5bb048a12da6b9074c5fdb5076ca11be
Downloads	4

Version	Date	Status	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:52:04 (UTC)		3	2.6 KB
0.0.0-0c7146d	08 Apr 2026 19:46:18 (UTC)		4	2.6 KB