Nextflow Modules
Showing module(s) with keyword "bcf"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/bcftools/csq | Process | annotation gff gff3 protein functional vcf bcf bcftools | bcftools Haplotype-aware consequence caller |
| nf-core/bcftools/pluginscatter | Process | scatter vcf bcf genomics | Split VCF by chunks or regions, creating multiple VCFs. |
| nf-core/bio2zarr/vcfpartition | Process | vcf bcf partition regions parallel genomics | Outputs a set of region strings that partition indexed VCF/BCF files for parallel processing. |
| nf-core/delly/call | Process | genome structural variants bcf | Call structural variants |
| nf-core/delly/sr | Process | genome structural variants bcf | Integrated structural variant (SV) prediction method |
| nf-core/jvarkit/dict2bed | Process | vcf bcf bed dict dictionary fasta fai | Extract BED file from hts files containing a dictionary (VCF,BAM, CRAM, DICT, etc...) |
| nf-core/jvarkit/vcf2table | Process | vcf bcf text html visualization | Convert VCF to a user friendly table |
| nf-core/jvarkit/vcffilterjdk | Process | vcf bcf filter variant java script | Filtering VCF with dynamically-compiled java expressions |
| nf-core/jvarkit/vcfpolyx | Process | vcf bcf annotation repeats | annotate VCF files for poly repeats |
| nf-core/plink/bcf | Process | plink bcf bed bim fam | Analyses binary variant call format (BCF) files using plink |
| nf-core/varlociraptor/filterfdr | Process | varlociraptor vcf bcf fdr variant filtering | Filter Varlociraptor variant calls using FDR control. |
| nf-core/vcfexpress | Process | vcf bcf filter lua expressions genomics | Filter a VCF/BCF and optionally print by template expression. If no template is given the output will be VCF/BCF |
| nf-core/vembrane/filter | Process | filter vcf bcf genomics variant annotation | Filter VCF files with vembrane |
| nf-core/vembrane/sort | Process | vcf bcf sort genomics variant prioritization | Sort VCF/BCF files by custom Python expressions for variant prioritization |
| nf-core/vembrane/table | Process | vcf bcf table genomics variant annotation | Creates tabular (TSV) files from VCF/BCF data with flexible Python expressions |