Nextflow Registry | nf-core/vclust/align@0.0.0-3fc6d40

nf-core/vclust/align @ 0.0.0-3fc6d40

The align command performs pairwise sequence alignments of viral genomes and provides similarity measures like ANI and coverage (alignment fraction)

cluster virus filter contig scaffold phage

Latest version: 0.0.0-6c4ed3a

Total downloads: 9

Source: nf-core/modules

Authors: @Joon-klaps

Maintainers: @Joon-klaps

The align command performs pairwise sequence alignments of viral genomes and provides similarity measures like ANI and coverage (alignment fraction)

Add the following snippet to your workflow script to include this module.

include { VCLUST_ALIGN } from 'nf-core/vclust/align'

MIT License

Process

`Name`	`VCLUST_ALIGN`

Input 3 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`fasta` file	Input fasta file containing sequences needed for filtering `*.{fasta,fna,fa}`

#2 tuple

`meta2` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`filter` file	Input txt file containing sequences relationships for filtering (generated with vclust prefilter) `*.txt`

`save_alignment` boolean	Save the pairwise alignments to a blast-like file. `*.aln.tsv`

Output 4 channels

#1 aln tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.aln.tsv` file	File similar to the BLASTn tabular output file, includes information on each local alignment between two genomes.

#2 ids tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.ids.tsv` file	File containing sequence IDs and their number of parts `*.ids.tsv`

#3 tsv tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`${prefix}.tsv` file	Sorted TSV file `*.tsv`

#4 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
vclust	Fast and accurate tool for calculating ANI and clustering virus genomes and metagenomes.	https://afproject.org/vclust/

Version	0.0.0-3fc6d40
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	22 Apr 2026 15:36:08 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fvclust%2Falign/0.0.0-3fc6d40/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/vclust/align/blobs/sha256:535aed28cce220181eccaea33caac3c4b46634aeb9930e631ca492350b90aae5
Size	3.2 KB
Checksum	sha256:535aed28cce220181eccaea33caac3c4b46634aeb9930e631ca492350b90aae5
Downloads	3

Version	Date	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:52:13 (UTC)	3	3.2 KB
0.0.0-3fc6d40	22 Apr 2026 15:36:08 (UTC)	3	3.2 KB
0.0.0-0c7146d	08 Apr 2026 19:46:30 (UTC)	3	3.2 KB