Nextflow Modules
Showing module(s) with keyword "contig"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/clusty | Process | cluster network contig scaffold alignment protein | Clusty is a tool for large-scale clustering using sparse distance matrices, suitable for datasets with millions of objects. |
| nf-core/cobrameta | Process | cobra contig scaffold assembly extension virus phage | A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly. |
| nf-core/fairy/coverage | Process | metagenomics coverage binning alignment-free contig | Computes coverage depth statistics for assembled contigs from one or more fairy sketch files, producing a MetaBAT2-compatible TSV with per-contig mean depth and variance columns. |
| nf-core/quast | Process | quast assembly quality contig scaffold | Quality Assessment Tool for Genome Assemblies |
| nf-core/vclust/align | Process | cluster virus filter contig scaffold phage | The align command performs pairwise sequence alignments of viral genomes and provides similarity measures like ANI and coverage (alignment fraction) |
| nf-core/vclust/cluster | Process | cluster virus filter contig scaffold phage | Vclust cluster performs threshold-based clustering by assigning a genome sequence to a cluster if its similarity (e.g., ANI) to the cluster meets or exceeds a user-defined threshold. |
| nf-core/vclust/prefilter | Process | cluster virus filter contig scaffold phage | The prefilter command creates a pre-alignment filter that reduces the number of genome pairs to be aligned by filtering out dissimilar sequences before the alignment step. |