nf-core/vg/deconstruct @ 0.0.0-0c7146d
Summary
Deconstruct snarls present in a variation graph in GFA format to variants in VCF format
Get started
Add the following snippet to your workflow script to include this module.
include { VG_DECONSTRUCT } from 'nf-core/vg/deconstruct'
License
MIT License
Process
Name
|
VG_DECONSTRUCT |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
gfa
file
|
Variation graph in GFA format *.{gfa}
|
pb
file
|
Optional snarls file (from vg snarls) to avoid recomputing. Usually ends with "pb". See "vg snarls". *.{pb}
|
|---|
gbwt
file
|
Optional GBWT file (from vg gbwt) so to only consider alt traversals that correspond to GBWT threads FILE. *.{gbwt}
|
|---|
Output
2 channels
#1
vcf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.vcf
file
|
Variants in VCF format *.{vcf}
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| vg | Variation graph data structures, interchange formats, alignment, genotyping, and variant calling methods. | https://github.com/vgteam/vg |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:46:48 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fvg%2Fdeconstruct/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/vg/deconstruct/blobs/sha256:d311afa1766319ddee351edbbd19a73e1112ff543c8f2efbbe0a53862ff355e1 |
| Size | 2.4 KB |
| Checksum | sha256:d311afa1766319ddee351edbbd19a73e1112ff543c8f2efbbe0a53862ff355e1 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:52:28 (UTC) | 4 | 2.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:36:19 (UTC) | 3 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:46:48 (UTC) | 1 | 2.4 KB |