Nextflow Modules
Showing module(s) with keyword "graph"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/bandage/image | Process | gfa graph assembly visualisation | Render an assembly graph in GFA 1.0 format to PNG and SVG image formats |
| nf-core/gfaffix | Process | gfa graph pangenome variation graph | Collapse walk-preserving shared affixes in variation graphs in GFA format |
| nf-core/gfatools/stat | Process | summary statistics gfa rgfa graph genomics | Summary statistics for GFA files |
| nf-core/magus/align | Process | MSA alignment genomics graph | Multiple Sequence Alignment using Graph Clustering |
| nf-core/magus/guidetree | Process | MSA guidetree genomics graph | Multiple Sequence Alignment using Graph Clustering |
| nf-core/panacus/histgrowth | Process | statistics pangenome graph gfa genomics | Calculates a coverage histogram from a GFA file and constructs a growth table from this as either a TSV or HTML file |
| nf-core/panacus/visualize | Process | statistics pangenome graph visualization tsv genomics | Create visualizations from a tsv coverage histogram created with panacus. |
| nf-core/seqwish/induce | Process | induce paf gfa graph variation graph | Induce a variation graph in GFA format from alignments in PAF format |
| nf-core/smoothxg | Process | gfa graph pangenome variation graph POA | Linearize and simplify variation graph in GFA format using blocked partial order alignment |
| nf-core/vg/construct | Process | vg graph construct fasta vcf structural variants | Constructs a graph from a reference and variant calls or a multiple sequence alignment file |
| nf-core/vg/deconstruct | Process | vcf gfa graph pangenome graph variation graph graph projection to vcf | Deconstruct snarls present in a variation graph in GFA format to variants in VCF format |
| nf-core/vg/index | Process | vg index graph structural_variants | write your description here |