Nextflow Registry | nf-core/virusrecom@0.0.0-bf60969

nf-core/virusrecom @ 0.0.0-bf60969

Information-theory-based method for recombination detection of viral lineages using weighted information content (WIC).

recombination virus genomics phylogenetics

Latest version: 0.0.0-bf60969

Total downloads: 0

Source: nf-core/modules

Authors: @haggaikelisha-ai

Maintainers: @haggaikelisha-ai

Information-theory-based method for recombination detection of viral lineages using weighted information content (WIC).

Add the following snippet to your workflow script to include this module.

include { VIRUSRECOM } from 'nf-core/virusrecom'

MIT License

Process

`Name`	`VIRUSRECOM`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`alignment` file	Aligned FASTA file containing viral sequences. Use [] when providing iwic input. `*.{fasta,fa,fna,fas}`
`mapping` file	Tab-separated file mapping sequence names to lineages `*.{txt,tsv}`
`iwic` file	Optional CSV file containing pre-computed WIC values. Use [] to skip. `*.csv`

`query` string	Name of the query lineage to test for recombination (e.g. query_recombinant). Use auto to scan all lineages.

Output 2 channels

#1 results tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`${prefix}/` directory	Directory containing virusrecom output files including WIC plots and recombination tables

#2 versions_virusrecom tuple

`${task.process}` string	The name of the process
`virusrecom` string	The name of the tool
`virusrecom -h 2>&1 \| sed -n 's/.Version: $[^ ]$.*/\1/p'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
virusrecom	An information-theory-based method for recombination detection of viral lineages.	https://github.com/ZhijianZhou01/virusrecom

Version	0.0.0-bf60969
Commit ID	bf60969a3abb40d294cffd5105f574637bfa6260
Release Date	21 May 2026 15:01:00 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fvirusrecom/0.0.0-bf60969/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/virusrecom/blobs/sha256:7881c2ec3f671d170dcd8bf5b4416f93b55c3e9f93b5052d1cc41e3c073914f4
Size	2.7 KB
Checksum	sha256:7881c2ec3f671d170dcd8bf5b4416f93b55c3e9f93b5052d1cc41e3c073914f4
Downloads	0

Version	Date	Status	Downloads	Size	Diff
0.0.0-bf60969	21 May 2026 15:01:00 (UTC)		0	2.7 KB	-