Nextflow Modules
Showing module(s) with keyword "recombination"
| Module | Keywords | Description |
|---|---|---|
| nf-core/clonalframeml | fasta multiple sequence alignment recombination | Predict recomination events in bacterial genomes |
| nf-core/gubbins | recombination alignment phylogeny | Gubbins (Genealogies Unbiased By recomBinations In Nucleotide Sequences) is an algorithm that iteratively identifies loci containing elevated densities of base substitutions while concurrently constructing a phylogeny based on the putative point mutations outside of these regions. |
| nf-core/hyphy/gard | recombination pre-processing selection inference gene evolution | GARD (Genetic Algorithm for Recombination Detection) is a method to screen a multiple sequence alignment for the presence of recombination and is extremely useful as a pre-processing step for selection inference. |
| nf-core/virusrecom | recombination virus genomics phylogenetics | Information-theory-based method for recombination detection of viral lineages using weighted information content (WIC). |