nf-core/vrhyme/linkbins @ 0.0.0-0c7146d
Summary
Linking bins output by vRhyme to create one sequences per bin
Get started
Add the following snippet to your workflow script to include this module.
include { VRHYME_LINKBINS } from 'nf-core/vrhyme/linkbins'
License
MIT License
Process
Name
|
VRHYME_LINKBINS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
bins
directory
|
Directory file containing bin FASTA files output by vRhyme (each bin having multiple sequences) |
Output
2 channels
#1
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#2
linked_bins
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*_linked_bins.fasta
file
|
FASTA file containing all bins that have been linked by N's *_linked_bins.fasta
|
| Tool | Description | Homepage |
|---|---|---|
| vrhyme | vRhyme functions by utilizing coverage variance comparisons and supervised machine learning classification of sequence features to construct viral metagenome-assembled genomes (vMAGs). | https://github.com/AnantharamanLab/vRhyme |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:47:10 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fvrhyme%2Flinkbins/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/vrhyme/linkbins/blobs/sha256:3a14fe97d0c3eb89cfb175c08ddfcfcdeaa486d1740eb0406ad949f4ca389c44 |
| Size | 2.6 KB |
| Checksum | sha256:3a14fe97d0c3eb89cfb175c08ddfcfcdeaa486d1740eb0406ad949f4ca389c44 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:52:39 (UTC) | 3 | 2.6 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:36:33 (UTC) | 4 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:47:10 (UTC) | 3 | 2.6 KB |