nf-core/vsearch/fastqfilter @ 0.0.0-0c7146d
Summary
Performs quality filtering and / or conversion of a FASTQ file to FASTA format.
Get started
Add the following snippet to your workflow script to include this module.
include { VSEARCH_FASTQFILTER } from 'nf-core/vsearch/fastqfilter'
License
MIT License
Process
Name
|
VSEARCH_FASTQFILTER |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'sample1'] |
|---|---|
fastq
file
|
FASTQ file to filter *.{fastq,fq,fastq.gz,fq.gz}
|
Output
3 channels
#1
log
*.log
file
|
Log file of the run *.log
|
|---|
#2
fasta
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'sample1'] |
|---|---|
*.fasta
file
|
Filtered FASTA file *.fasta
|
#3
versions_vsearch
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
vsearch
string
|
The tool name |
vsearch --version 2>&1 | sed -n "1s/.*v\([0-9.]*\).*/\\1/p"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| vsearch | VSEARCH is a versatile open-source tool for microbiome analysis, including chimera detection, clustering, dereplication and rereplication, extraction, FASTA/FASTQ/SFF file processing, masking, orienting, pair-wise alignment, restriction site cutting, searching, shuffling, sorting, subsampling, and taxonomic classification of amplicon sequences for metagenomics, genomics, and population genetics. (USEARCH alternative) | https://github.com/torognes/vsearch |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:47:17 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fvsearch%2Ffastqfilter/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/vsearch/fastqfilter/blobs/sha256:237ea851b94bdb61c91a3323ed68015c2e2629f3b2c2fdc4bf325f3daf8ca37e |
| Size | 2.7 KB |
| Checksum | sha256:237ea851b94bdb61c91a3323ed68015c2e2629f3b2c2fdc4bf325f3daf8ca37e |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:52:44 (UTC) | 3 | 2.7 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:36:38 (UTC) | 1 | 2.8 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:47:17 (UTC) | 1 | 2.7 KB |