Nextflow Registry | nf-core/vt/decompose@0.0.0-6c4ed3a

nf-core/vt/decompose @ 0.0.0-6c4ed3a

decomposes multiallelic variants into biallelic in a VCF file.

decompose multiallelic small variants snps indels

Latest version: 0.0.0-6c4ed3a

Total downloads: 9

Source: nf-core/modules

Authors: @nvnieuwk

Maintainers: @nvnieuwk

decomposes multiallelic variants into biallelic in a VCF file.

Add the following snippet to your workflow script to include this module.

include { VT_DECOMPOSE } from 'nf-core/vt/decompose'

MIT License

Process

`Name`	`VT_DECOMPOSE`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`vcf` file	The VCF file to decompose `*.vcf(.gz)?`
`intervals` file	The intervals of the variants of decompose `*.bed`

Output 2 channels

#1 vcf tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`*.vcf.gz` file	The decomposed VCF file `*.vcf.gz`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
vt	A tool set for short variant discovery in genetic sequence data	https://genome.sph.umich.edu/wiki/Vt

Version	0.0.0-6c4ed3a
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	23 Apr 2026 15:52:49 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fvt%2Fdecompose/0.0.0-6c4ed3a/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/vt/decompose/blobs/sha256:16e659056099bebe6e9fd5f47b04de0a6cc16e8288becfd414f4c196ac571b52
Size	2.5 KB
Checksum	sha256:16e659056099bebe6e9fd5f47b04de0a6cc16e8288becfd414f4c196ac571b52
Downloads	3

Version	Date	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:52:49 (UTC)	3	2.5 KB
0.0.0-3fc6d40	22 Apr 2026 15:36:43 (UTC)	3	2.5 KB
0.0.0-0c7146d	08 Apr 2026 19:47:24 (UTC)	3	2.5 KB