Nextflow Modules
Showing module(s) with keyword "indels"
| Module | Keywords | Description |
|---|---|---|
| nf-core/abra2 | alignment realignment indels bam dna rna splice-junctions assembly | Assembly Based ReAligner for next-generation sequencing data |
| nf-core/gatk4/mutect2 | gatk4 haplotype indels mutect2 snvs somatic | Call somatic SNVs and indels via local assembly of haplotypes. |
| nf-core/manta/convertinversion | structural variants conversion indels | Manta calls structural variants (SVs) and indels from mapped paired-end sequencing reads. This script reformats inversions into single inverted sequence junctions which was the format used in Manta versions <= 1.4.0. |
| nf-core/vt/decompose | decompose multiallelic small variants snps indels | decomposes multiallelic variants into biallelic in a VCF file. |
| nf-core/vt/decomposeblocksub | decomposeblocksub multiallelic small variants snps indels block substitutions | Decomposes biallelic block substitutions into its constituent SNPs. |
| nf-core/vt/normalize | normalization vcf snps indels | normalizes variants in a VCF file |