nf-core/windowmasker/mkcounts @ 0.0.0-0c7146d
Summary
A program to generate frequency counts of repetitive units.
Get started
Add the following snippet to your workflow script to include this module.
include { WINDOWMASKER_MKCOUNTS } from 'nf-core/windowmasker/mkcounts'
License
MIT License
Process
Name
|
WINDOWMASKER_MKCOUNTS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
ref
file
|
An input nucleotide fasta file. |
Output
2 channels
#1
counts
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.txt
file
|
A file containing frequency counts of repetitive units. *.txt
|
#2
versions_windowmasker
tuple
${task.process}
string
|
The name of the process |
|---|---|
windowmasker
string
|
The name of the tool |
windowmasker -version-full | head -n 1 | sed 's/^.*windowmasker. //; s/ .*\$//'
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| windowmasker | A program to mask highly repetitive and low complexity DNA sequences within a genome. | https://github.com/ncbi/ncbi-cxx-toolkit-public |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:47:46 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fwindowmasker%2Fmkcounts/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/windowmasker/mkcounts/blobs/sha256:691200d45a80ca566e4d292533e2eba59a5a25ac6d24e0bde7ca02f1a047d3e5 |
| Size | 2.4 KB |
| Checksum | sha256:691200d45a80ca566e4d292533e2eba59a5a25ac6d24e0bde7ca02f1a047d3e5 |
| Downloads | 2 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:53:03 (UTC) | 4 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:47:46 (UTC) | 2 | 2.4 KB |