nf-core/yara/mapper @ 0.0.0-3fc6d40
Summary
Align reads to a reference genome using YARA
Get started
Add the following snippet to your workflow script to include this module.
include { YARA_MAPPER } from 'nf-core/yara/mapper'
License
MIT License
Process
Name
|
YARA_MAPPER |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
reads
file
|
List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively. |
#2
tuple
meta2
map
|
Groovy Map containing index information e.g. [ id:'test' ] |
|---|---|
index
file
|
YARA genome index files |
Output
4 channels
#1
bai
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.mapped.bam.bai
file
|
Sorted BAM file index *.{bai}
|
#2
bam
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.mapped.bam
file
|
Sorted BAM file *.{bam}
|
#3
versions_yara
tuple
${task.process}
string
|
The name of the process |
|---|---|
yara
string
|
The name of the tool |
yara_mapper --version 2>&1 | grep 'yara_mapper version' | sed 's/^.*yara_mapper version: //; s/ .*\$//'
eval
|
The expression to obtain the version of the tool |
#4
versions_samtools
tuple
${task.process}
string
|
The name of the process |
|---|---|
samtools
string
|
The name of the tool |
samtools --version 2>&1 | head -n1 | sed 's/^.*samtools //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| yara | Yara is an exact tool for aligning DNA sequencing reads to reference genomes. | https://github.com/seqan/seqan |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | bf60969a3abb40d294cffd5105f574637bfa6260 |
| Release Date | 22 Apr 2026 15:37:13 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fyara%2Fmapper/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/yara/mapper/blobs/sha256:20b35a7418158441ae1ad776e2bc1dfc89206af519e74bd35c537a8c79e25749 |
| Size | 3.1 KB |
| Checksum | sha256:20b35a7418158441ae1ad776e2bc1dfc89206af519e74bd35c537a8c79e25749 |
| Downloads | 0 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-bf60969 | 21 May 2026 15:00:53 (UTC) | 0 | 3.1 KB | ↔ | |
| 0.0.0-6c4ed3a | 23 Apr 2026 15:53:23 (UTC) | 0 | 3.0 KB | ↔ | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:37:13 (UTC) | 0 | 3.1 KB | ↔ | |
| 0.0.0-0c7146d |