Nextflow Modules
Showing module(s) with keyword "Bowtie"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/fastq_find_mirna_mirdeep2 | Workflow | miRNA FASTQ FASTA Bowtie miRDeep2 | This subworkflow identifies miRNAs from FASTQ files using miRDeep2. The workflow converts FASTQ to FASTA, processes and replaces any whitespace in sequence IDs, builds a Bowtie index of the genome, and then maps reads using miRDeep2 mapper before identifying known and novel miRNAs. |