Nextflow Modules
Showing module(s) with keyword "FASTQ"
| Module | Keywords | Description |
|---|---|---|
| cellgeni/rename10xsample | 10x single-cell FASTQ rename Cell Ranger sample | Collects per-run Cell Ranger-style FASTQs for a sample and renames them to a consistent sample-level naming scheme, ready for downstream alignment. |
| cellgeni/sra2fastq | SRA FASTQ conversion single-cell 10x public data | Converts a local SRA file to split gzipped FASTQ files using parallel-fastq-dump, producing one FASTQ per read slot ready for downstream processing. |
| nf-core/fast2q | CRISPRi FASTQ genomics | A program that counts sequence occurrences in FASTQ files. |
| nf-core/slimfastq | FASTQ compression lossless | Fast, efficient, lossless compression of FASTQ files. |
| nf-core/spring/compress | FASTQ compression lossless | Fast, efficient, lossless compression of FASTQ files. |
| nf-core/spring/decompress | FASTQ decompression lossless | Fast, efficient, lossless decompression of FASTQ files. |
| nf-core/sratools/fasterqdump | sequencing FASTQ dump | Extract sequencing reads in FASTQ format from a given NCBI Sequence Read Archive (SRA). |