Nextflow Modules
Showing module(s) with keyword "VQSR"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/sentieon/applyvarcal | Process | sentieon applyvarcal varcal VQSR | Apply a score cutoff to filter variants based on a recalibration table. Sentieon's Aplyvarcal performs the second pass in a two-stage process called Variant Quality Score Recalibration (VQSR). Specifically, it applies filtering to the input variants based on the recalibration table produced in the previous step VarCal and a target sensitivity value. https://support.sentieon.com/manual/usages/general/#applyvarcal-algorithm |