Nextflow Modules
Showing module(s) with keyword "bed6"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/custom/bed12codonpositions | Process | bed12 bed6 codon splicing coordinates | Expand a BED12 into a BED6 of in-frame mRNA positions, projected back to genomic coordinates. Default behaviour emits one row per codon (the 5' nucleotide); --step / --width / --frame control the stride, span and offset on the spliced mRNA. Useful for codon-level work on spliced features (e.g. ribo-seq P-site counts per codon, frame / periodicity QC, novel-ORF tiling). |