Nextflow Modules
Showing module(s) with keyword "biosynthetic gene clusters"
| Module | Keywords | Description |
|---|---|---|
| nf-core/bigslice/bigslice | biosynthetic gene clusters genomics analysis | A scalable tool for large-scale analysis of Biosynthetic Gene Clusters (BGCs). It takes genome regions in GenBank format along with an HMM database and produces a SQLite database and FASTA outputs of predicted features. |
| nf-core/bigslice/downloaddb | biosynthetic gene clusters genomics database download | Downloads and extracts the BiG-SLiCE HMM database (biosynthetic and sub Pfams) using the bundled `download_bigslice_hmmdb` script shipped with BiG-SLiCE. The resulting directory can be passed directly as the `hmmdb` input to the `BIGSLICE` module. |