Nextflow Modules
Showing module(s) with keyword "BGC"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/antismash/antismash | Process | secondary metabolites BGC biosynthetic gene cluster genome mining NRPS RiPP antibiotics prokaryotes bacteria eukaryotes fungi antismash | antiSMASH allows the rapid genome-wide identification, annotation and analysis of secondary metabolite biosynthesis gene clusters. |
| nf-core/antismash/antismashdownloaddatabases | Process | secondary metabolites BGC biosynthetic gene cluster genome mining NRPS RiPP antibiotics prokaryotes bacteria eukaryotes fungi antismash database | antiSMASH allows the rapid genome-wide identification, annotation and analysis of secondary metabolite biosynthesis gene clusters. This module downloads the antiSMASH databases for conda and docker/singularity runs. |
| nf-core/antismash/antismashlite | Process | secondary metabolites BGC biosynthetic gene cluster genome mining NRPS RiPP antibiotics prokaryotes bacteria eukaryotes fungi antismash | antiSMASH allows the rapid genome-wide identification, annotation and analysis of secondary metabolite biosynthesis gene clusters. |
| nf-core/antismash/antismashlitedownloaddatabases | Process | secondary metabolites BGC biosynthetic gene cluster genome mining NRPS RiPP antibiotics prokaryotes bacteria eukaryotes fungi antismash database | antiSMASH allows the rapid genome-wide identification, annotation and analysis of secondary metabolite biosynthesis gene clusters. This module downloads the antiSMASH databases for conda and docker/singularity runs. |
| nf-core/bigscape/bigscape | Process | biosynthetic gene clusters BGC clustering similarity network antiSMASH gene cluster families secondary metabolites natural products | BiG-SCAPE (Biosynthetic Gene Similarity Clustering and Prospecting Engine) clusters biosynthetic gene clusters (BGCs) into gene cluster families (GCFs) based on sequence similarity networks. It takes antiSMASH-annotated GenBank files and a Pfam database as input, and produces similarity networks and clustering results. |
| nf-core/deepbgc/download | Process | database download BGC biosynthetic gene cluster deep learning neural network random forest genomes bacteria fungi | Database download module for DeepBGC which detects BGCs in bacterial and fungal genomes using deep learning. |
| nf-core/deepbgc/pipeline | Process | BGC biosynthetic gene cluster deep learning neural network random forest genomes bacteria fungi | DeepBGC detects BGCs in bacterial and fungal genomes using deep learning. |