Nextflow Modules
Showing module(s) with keyword "contamination removal"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/cleanifier/download | Process | download index metagenomics contamination removal microbiome | Download human reference index |
| nf-core/cleanifier/filter | Process | contamination removal metagenomics microbiome filter | Fast, lightweight contamination removal from microbiome data (FASTQ) using a probabilistic Cuckoo filter or Cuckoo hash table index |
| nf-core/cleanifier/index | Process | index genomics metagenomics contamination removal microbiome | Builds a Cuckoo filter or Cuckoo hash table index from reference sequences (FASTA/FASTQ) for fast contamination removal. |