Nextflow Modules
Showing module(s) with keyword "microbiome"
| Module | Keywords | Description |
|---|---|---|
| nf-core/amps | malt MaltExtract HOPS amps alignment metagenomics ancient DNA aDNA palaeogenomics archaeogenomics microbiome authentication damage edit distance post Post-processing visualisation | Post-processing script of the MaltExtract component of the HOPS package |
| nf-core/malt/build | malt alignment metagenomics ancient DNA aDNA palaeogenomics archaeogenomics microbiome database | MALT, an acronym for MEGAN alignment tool, is a sequence alignment and analysis tool designed for processing high-throughput sequencing data, especially in the context of metagenomics. |
| nf-core/maltextract | malt MaltExtract HOPS alignment metagenomics ancient DNA aDNA palaeogenomics archaeogenomics microbiome authentication damage edit distance | Tool for evaluation of MALT results for true positives of ancient metagenomic taxonomic screening |
| nf-core/malt/run | malt alignment metagenomics ancient DNA aDNA palaeogenomics archaeogenomics microbiome | MALT, an acronym for MEGAN alignment tool, is a sequence alignment and analysis tool designed for processing high-throughput sequencing data, especially in the context of metagenomics. |
| nf-core/picrust2/pipeline | metagenomics functional prediction 16S microbiome | Predict metagenome functional content from marker gene sequences and OTU/ASV abundance data |
| nf-core/vsearch/cluster | vsearch clustering microbiome | Cluster sequences using a single-pass, greedy centroid-based clustering algorithm. |