Nextflow Modules
Showing module(s) with keyword "gatk4spark"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/gatk4spark/applybqsr | Process | bam base quality score recalibration bqsr cram gatk4spark | Apply base quality score recalibration (BQSR) to a bam file |
| nf-core/gatk4spark/baserecalibrator | Process | base quality score recalibration table bqsr gatk4spark sort | Generate recalibration table for Base Quality Score Recalibration (BQSR) |
| nf-core/gatk4spark/markduplicates | Process | bam gatk4spark markduplicates sort | This tool locates and tags duplicate reads in a BAM or SAM file, where duplicate reads are defined as originating from a single fragment of DNA. |