Nextflow Modules
Showing module(s) with keyword "genomicsdbimport"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/bam_create_som_pon_gatk | Workflow | gatk4 mutect2 genomicsdbimport createsomaticpanelofnormals variant_calling genomicsdb_workspace panel_of_normals | Perform variant calling on a set of normal samples using mutect2 panel of normals mode. Group them into a genomicsdbworkspace using genomicsdbimport, then use this to create a panel of normals using createsomaticpanelofnormals. |
| nf-core/gatk4/genomicsdbimport | Process | gatk4 genomicsdb genomicsdbimport jointgenotyping panelofnormalscreation | merge GVCFs from multiple samples. For use in joint genotyping or somatic panel of normal creation. |