Nextflow Modules
Showing module(s) with keyword "panel_of_normals"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/bam_create_som_pon_gatk | Workflow | gatk4 mutect2 genomicsdbimport createsomaticpanelofnormals variant_calling genomicsdb_workspace panel_of_normals | Perform variant calling on a set of normal samples using mutect2 panel of normals mode. Group them into a genomicsdbworkspace using genomicsdbimport, then use this to create a panel of normals using createsomaticpanelofnormals. |
| nf-core/ichorcna/createpon | Process | ichorcna cnv cna cfDNA wgs panel_of_normals | ichorCNA is an R package for calculating copy number alteration from (low-pass) whole genome sequencing, particularly for use in cell-free DNA. This module generates a panel of normals |