Nextflow Modules
Showing module(s) with keyword "header"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/samtools/splitheader | Process | view bam sam cram readgroup program sequence header | Extract header lines from a SAM/BAM/CRAM file into separate files depending on type |
| nf-core/samtools/trimheader | Process | bam header reference samtools | Remove @SQ header lines for references without any reads, keeping every read. Some tools, such as featureCounts, cannot read a BAM header over 2 GiB, which a very fragmented assembly produces. |
| nf-core/seqtk/rename | Process | rename fastx header | Rename sequence names in FASTQ or FASTA files. |