Nextflow Modules
Showing module(s) with keyword "indel"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/gatk/indelrealigner | Process | bam vcf variant calling indel realignment | Performs local realignment around indels to correct for mapping errors |
| nf-core/gatk/realignertargetcreator | Process | bam vcf variant calling indel realignment targets | Generates a list of locations that should be considered for local realignment prior genotyping. |
| nf-core/lofreq/indelqual | Process | variant calling variants bam indel qualities | Inserts indel qualities in a BAM file |
| nf-core/vardictrust | Process | variant calling vcf bam snv indel | Memory-safe Rust rewrite of VarDictJava for single and paired sample variant calling |