Nextflow Modules
Showing module(s) with keyword "irods"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| cellgeni/irods/getmetadata | Process | irods metadata csv | Module to get metadata from an iRODS collections and data objects and output as CSV |
| cellgeni/irods/loadcatalog | Process | irods download data transfer collection | Downloads a whole iRODS collection with iget, keeping its folder layout and skipping files with unwanted extensions (e.g. BAM/CRAM/FASTQ). |