Nextflow Modules
Showing module(s) with keyword "csv"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| cellgeni/irods/getmetadata | Process | irods metadata csv | Module to get metadata from an iRODS collections and data objects and output as CSV |
| nf-core/csvtk/concat | Process | concatenate tsv csv | Concatenate two or more CSV (or TSV) tables into a single table |
| nf-core/csvtk/join | Process | join tsv csv | Join two or more CSV (or TSV) tables by selected fields into a single table |
| nf-core/csvtk/mutate2 | Process | mutate tsv csv | Create a new column from selected fields by awk-like arithmetic/string expressions |
| nf-core/csvtk/sort | Process | sort tsv csv | Sort CSV (or TSV) tables |
| nf-core/csvtk/split | Process | split csv tsv | Splits CSV/TSV into multiple files according to column values |
| nf-core/datavzrd | Process | visualisation tsv csv | Datavzrd is a tool to create visual HTML reports from collections of CSV/TSV tables. |
| nf-core/duckdb/table2parquet | Process | parquet csv tsv conversion | Convert a delimited text table (CSV or TSV, gzipped or not) to Parquet |
| nf-core/genmap/map | Process | mappability index fasta bedgraph csv wig | create mappability files for a genome |
| nf-core/mat2json | Process | file conversion matlab json csv | converst matlab .mat files into json or csv files. |
| nf-core/metaspace/download | Process | metaspace metabolite annotation data-download csv | A module to download dataset results from the METASPACE platform and save them as CSV files, using a containerized Python script. Inputs are provided via a CSV file or a list of datasets, with results saved to a specified output directory. |
| nf-core/qsv/cat | Process | concatenate tsv csv | Concatenate two or more CSV (or TSV) tables into a single table |